Two other articles that cover code examples are Using RSA encryption with Java by Aviran Mordo at http://www.aviransplace.com/index.php/archives/2004/10/12/using-rsa-encryption-with-java/2/...
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and Public Key Cryptography 101 Using Java by Richard G. Baldwin: http://www.developer.com/java/ent/article.php/3447491
Finally, if you don't already have it, I suggest looking into the Java Cryptography Extension (JCE)Reference Guide for the Java 2 SDK, Standard Edition, v 1.4 is available at http://java.sun.com/j2se/1.4.2/docs/guide/security/jce/JCERefGuide.html
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